EventsMOL2NET'15, Conference on Molecular, Biomed., Comput. & Network Science and Engineering, 1st ed.
Published
This submission belongs to the session 01. CHEMBIO.INFO-01: Cheminfo., Chemom., Comput. Quantum Chem. & Bioinfo. Congress, Cambridge, UK-Chapel Hill and Richmond, USA, 2015 of the event MOL2NET'15, Conference on Molecular, Biomed., Comput. & Network Science and Engineering, 1st ed.
Published date
04 Dec, 2015
Citation
Georgia Tsiliki, Cristian R Munteanu, Jose A Seoane, Carlos Fernandez-Lozano, Haralambos Sarimveis, Egon L Willighagen, Using the RRegrs R package for automating predictive modelling, in Proceedings of MOL2NET'15, Conference on Molecular, Biomed., Comput. & Network Science and Engineering, 1st ed., 5 December–15 December 2015, MDPI: Basel, Switzerland, doi: 10.3390/MOL2NET-1-F009
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Using the RRegrs R package for automating predictive modelling

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1. School of Chemical Engineering, National Technical University of Athens, 15780, Greece
2. RNASA-IMEDIR Group, Computer Science Faculty, University of A Coruna, 15071 A Coruña, Spain
3. Stanford Cancer Institute, Stanford University, C. J. Huang Building, 780 Welch Road, Palo Alto, CA
4. Department of Bioinformatics‑BiGCaT, NUTRIM, Maastricht University, P.O. Box 616, UNS50 Box 19, 6200 MD Maastricht, The Netherlands
Abstract

Cheminformatics and bioinformatics are extensively using predictive modelling and exhibit a need for standardization of methodologies such as data splitting, cross-validation methods, best model criteria and Y-randomization. RRegrs is a new R package, available at https://www.github.com/enanomapper/RRegrs (0.05 release), which suggests an integrated framework to assist model selection and speed up the process of predictive model development. The tool proposes a fully validated scheme by employing repeated 10-fold and leave-one-out cross-validation for ten linear and non-linear regression methods. Standardized reports are produced to compare the output of modelling algorithms and assess cross-validation results for selected models. Here, we demonstrate RRegrs capabilities in terms of performance using five well-established data sets.

Keywords
Multiple regression
QSAR
cross-validation
model selection
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