Semiconductor photocatalysis has attracted increasing attention as a sustainable strategy for the degradation of organic pollutants in wastewater due to its ability to mineralize contaminants under light irradiation. Among semiconductor photocatalysts, TiO2 stands out because of its chemical stability, low cost and high photocatalytic activity. In this work, TiO2 nanoparticles were synthesized through the decomposition of ammonium titanyl peroxide (PTA) followed by hydrothermal treatment at 200 °C for 4 h under alkaline conditions (pH 12). After synthesis, the supernatant and precipitate phases were separated, recovered and evaluated independently, while commercial TiO2 was used as a reference material. The photocatalytic performance was investigated through the degradation of methylene blue and rhodamine B under UV irradiation (254 nm) at 25 °C. Dye concentrations were monitored by UV-Vis spectrophotometry, and degradation efficiencies were determined using the Beer–Lambert law. The TiO2 obtained from the supernatant phase exhibited the highest photocatalytic activity, achieving degradation efficiencies of 66.7% for methylene blue and 67.1% for rhodamine B. These values exceeded those obtained with commercial TiO2 (65.9% and 60.8%, respectively) and were significantly higher than those achieved with the precipitate phase (49.5% and 11.6%). The enhanced performance of the supernatant-derived TiO2 is attributed to the hydrothermal synthesis conditions, which likely promoted the formation of particles with higher surface area and a greater ability to generate reactive oxygen species. Ongoing structural and morphological characterization studies, including X-ray diffraction and scanning electron microscopy, will provide further insight into the relationship between synthesis, microstructure and photocatalytic activity. These findings demonstrate that phase separation during hydrothermal synthesis is a simple and effective strategy for obtaining highly active TiO2 photocatalysts for environmental remediation.