Wednesday 29 March 2023 |
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13:00 – 13.30 |
Registration Desk Open (Check-in) |
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13:30 – 13:45 |
Welcome from the Chairs |
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Session 1. Part I |
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13:45 – 14:25 |
Keynote Talk: Manel Esteller - Using Single Cell Multiomics in Cancer: From Knowledge to Applications |
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14:25 – 14:40 |
Silvia Ogbeide - Single-cell multi-omics profiling in the study of colorectal cancer evolution |
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14:40 – 14:55 |
Francesca Nadalin - Single-cell multi-omic lineage tracing uncouples tumour initiation and drug tolerance in breast cancer |
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14:55 – 15:10 |
Enrico Sebastiani - An Investigation of the origin of neuroblastoma with single-cell transcriptomic analyses |
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15:10 – 15:25 |
Igor Filippov - Single-cell re-analysis of human transcriptomes reveals shared characteristics of immune ageing |
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15:25 – 15:50 |
Invited Talk:Anelia Horvath - Identification and analysis of cell-specific expressed genetic variants from scRNA-seq data | |
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15:50 – 16:20 |
Coffee Break |
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Session 2. Part I |
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16:20 – 16:50 |
Invited Talk: Nacho Molina - Biophysics-informed interpretable deep learning to model gene regulation from single-cell and single-molecule genomic data | |
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16:50 – 17:05 |
Kyoung Jae Won - Legible Gene Regulatory Network Reconstruction using Multivariate Transfer Entropy Over Single Cell Transcriptomics Data |
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17:05 – 17:20 |
Bogac Aybey - Immune cell type signature discovery and random forest classification for analysis of single cell gene expression datasets |
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17:20 – 18:00 |
Keynote Talk: Sandrine Dudoit - Learning from Data in Single-Cell Transcriptomics |
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20:00 |
Conference Dinner |
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Thursday 30 March 2023 |
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Session 1. Part II |
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08:30 – 09:00 |
Invited Talk: Merja Heinäniemi - Multimodal methods in single cell immunogenomics |
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09:00 – 09:15 |
Kalle Rytkönen - Gene regulatory network analysis of decidual stromal cells and natural killer cells |
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09:15 – 09:30 |
Alexandre Gaspar-Maia - Single cell multiomic analysis of Clonal Hematopoiesis reveals enhancer deregulation and increased COVID-19 inflammation severity |
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09:30 – 09:45 |
Sara Terzoli - Expansion of memory Vδ2 T cells following repeated exposure to mRNA SARS-CoV-2 vaccination |
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09:45 – 10:00 |
Alejandro Jiménez Sánchez - Optimized tumor metastatic phenotypes among distal metastatic lesions in pancreatic ductal adenocarcinoma |
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10:00 – 10:30 |
Invited Talk: Merav Cohen - The Functional Role of Immune-Related Intercellular Signaling Networks during Tissue Development and Cancer |
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10:30 – 11:00 |
Coffee Break sponsored by Parse Biosciences |
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Session 1. Part III |
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11:00 – 11:15 |
Enrico Gaffo - Benchmarking of methods for assessing circular RNA differential expression in single-cell RNA-seq data |
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11:15 – 11:30 |
Amy Hamilton - Unlocking the potential for single-cell sequencing at scale with combinatorial indexing |
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11:30 – 11:45 |
Celia Alda Catalinas - Mapping the functional impact of immune disease associated regulatory elements through single-cell CRISPR-based screens |
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11:45 – 12:00 |
Rapolas Zilionis - Robust and versatile ultra-high-throughput single-microbe genome sequencing |
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12:00 – 12:15 |
Veredas Coleto Alcudia - TOTEM: A Web Tool For Tissue Enrichment On Gene Lists With Single Cell Resolution |
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12:15 – 12:30 |
Emma Busarello - Harmonizing the annotation of single cells in normal and aberrant hematopoiesis with the Cell Marker Accordion |
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12:30 – 13:45 |
Lunch |
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Session 3 |
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13:45 – 14:00 |
Kyoung Jae Won - Image processing approach to spatial genomics data identifies tissue architecture and cell-contact specific gene regulation |
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14:00 – 14:15 |
Biao Lu - Alteration of transcriptions loaded in engineered extracellular vesicles using transmembrane scaffolds |
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14:15 – 14:30 |
Susmita Datta - Inferring cell-cell communications from spatially resolved transcriptomics data |
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14:30 – 14:45 |
Alba Garrido Trigo - Macrophage and neutrophil heterogeneity at single-cell spatial resolution in inflammatory bowel disease |
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14:45 – 15:00 |
Kang Jin - Gene colocalization-aware segmentation of image-based spatial transcriptomics using Graph Neural Networks |
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15:00 – 15:30 |
Cofee Break |
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Session 1. Part IV |
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15:30 – 16:00 |
Invited Talk: Björn Reinius - Dosage compensation dynamics unmasked by allele-specific single-cell transcriptomics |
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16:00 – 16:15 |
Evgenia Ulianova - Cell-Level Analysis of Telomeric Transcripts and Telomere-Associated Gene Variants |
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16:15 – 16:30 |
Meltem Omur - Characterization of gene regulatory networks and combinatorial transcription factor interactions during pancreatic β-cell differentiation |
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16:30 – 16:45 |
Florina Moldovan - Estrogen Regulation of POC5 centriolar protein by ERafla is Altered in Human Scoliotic Cells |
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16:45 – 17:00 |
Efthalia Preka - Dynamic transcriptomic alterations of microglia following cranial irradiation in the juvenile mouse hippocampus |
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17:00 - 17:30 |
Invited Talk: Antonio Herrera Camacho - Spatiotemporal transcriptomic mapping of the mouse embryonic brain under folate-deficient conditions |
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Friday 31 March 2023 |
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Session 2. Part II |
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08:30 – 09:10 |
Keynote Talk:Oliver Stegle - From genotype to phenotype with single-cell resolution |
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09:10 – 09:25 |
Piotr Słowiński - Model-driven AI for multi-omics data analysis |
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09:25 – 09:40 |
Yunhee Jeong - scMaui: variational autoencoders combined with adversarial learning reveal cellular heterogeneity from single-cell multiomics data and handle multiple batch effects independently |
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09:40 – 10:10 |
Invited Talk: Krasimira Tsaneva Atanasova - Topological data analysis for single cell sequencing data |
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10:10 – 10:40 |
Coffee Break |
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Session 1. Part V |
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10:40 – 11:10 |
Invited Talk: Irene Papatheodorou - Computational analysis of cell atlases across species |
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11:10 – 11:20 |
Karin Engström - Comparison between scRNA-seq and snRNA-seq as sequencing strategies in five different tissues. |
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11:20 – 11:35 |
Martina Höckner - Single-cell analysis reveal Cd-related effects on immune cells (coelomocytes) from the earthworm Lumbricus terrestris |
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11:35 – 11:50 |
Ana Hernández de Sande - Cell-type-specific characterization of miRNA gene dynamics in immune cell subpopulations during aging and atherosclerosis disease progression at single-cell resolution |
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11:50 – 12:05 |
Nadine Bestard Cuche - Marked regional heterogeneity of white matter glia in the human frontal lobe, cerebellum and spinal cord |
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12:05 – 12:20 |
Oksana Ivanova - LMNA R482L mutation-specific impairments of skeletal muscle metabolism are associated with pathological accumulation of reactive oxygen species |
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12:20 – 12:50 |
Invited Talk: Abel González -Somatic mutations in cancer and normal tissues |
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12:50 |
Award Ceremony and Closing Remarks |