Covariation of multiple parts of morphological traits (referred as morphological integration) in combination with investigation about the presence of subunites (modules), and level of integration both within and between themselves (referred as modularity), have been studied in great number of animals. The presence of modularity may have an impact on both development and evolution of the species, because separate module may develop and evolve in a separate and different way. The aim of our study was to test the hypothesis that the distal region of the head capsule is a module in millipede Megaphyllum bosniense (Verhoeff, 1897) using geometric morphometrics. Millipede samples were collected from population inhabiting Mt. Avala (near Belgrade, Serbia). Several different programs were used: MakeFan, TpsDig, CoordGen, MorphoJ, and R program. Allometry was significant for the asymmetric component (FA), so further analyses were conducted on residual values of FA. Modularity hypothesis is accepted, because our results indicated that covariance coefficients (RV) for FA had lower values than 92.86% of other RV coefficients obtained by a random contiguous partition of dorsal part of the head capsule. The scaled variance of the eigenvalues of the FA (EV) was significantly lower after than before allometry removal. Considering obtained results, distal and proximal regions of the head capsule develop and function as separate modules, which indicate that mentioned structures have different developmental pathways and functions in this julidan species.