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Structural and phenotypic plasticity of the RBD loop2 region is a key determinant for HKU5r-CoVs’ emergence in mink
1 , 2 , 3 , 3 , * 2 , * 1 , * 1
1  Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan
2  Paul G. Allen School for Global Health, Washington State University, Pullman, WA, USA
3  Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
Academic Editor: Eric Freed

Abstract:

The emergence of novel coronaviruses from animal reservoirs continues to pose significant zoonotic threats. Here, we investigate the evolutionary origins of a recently reported mink-derived HKU5-related coronavirus (nvHKU5r-CoV), as well as the virus’s structural and functional properties. Phylogenetic and recombination analyses reveal that nvHKU5r-CoV originated from bat HKU5-like viruses circulating in southeastern China. We characterize the spike loop2 region as a critical determinant of ACE2 receptor specificity and show that the bat merbecovirus with the closest loop2 sequence to nvHKU5r-CoV could already utilize mink ACE2. Targeted mutagenesis demonstrates that a single amino acid substitution (R548S) further enables robust entry via human ACE2, highlighting the zoonotic potential of HKU5r-CoVs. Molecular dating suggests prolonged period of circulation in bats prior to this virus’s transmission to mink, and viral entry assays using pseudovirus infectivity and full-length replication competent infectious clones confirm replication in mink ACE2-expressing cells. Using AlphaFold3, we predicted spike-ACE2 binding interfaces consistent with our experimental infectivity results, and instrumental in interpreting the structural basis of these interactions. These findings emphasize the evolutionary plasticity of HKU5r-CoV RBDs and the role of fur farming as potential hotspots for coronavirus emergence.

Keywords: HKU5; MERS-CoV; merbecovirus; evolution; mink

 
 
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