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Transcriptomic profiling of fruits from pepper (Capsicum annuum L.), variety Padrón (mild hot), at two ripening states
* 1 , 1 , 2
1  Group of Antioxidants, Free Radicals and Nitric Oxide in Biotechnology, Food and Agriculture, Estación Experimental del Zaidín, Spanish National Research Council (CSIC), Granada, Spain.
2  Group of Antioxidants, Free Radicals and Nitric Oxide in Biotechnology, Food and Agriculture, Estación Experimental del Zaidín, Spanish National Research Council (CSIC), Granada, Spain

Published: 06 May 2021 by MDPI in The 1st International Electronic Conference on Agronomy session Posters
Abstract:

Pepper (Capsicum annuum L.) fruits are one of the most consumed vegetables worldwide. This produce has a great agro-economical relevance since it is extensively cultivated. These fruits are characterized by their high vitamin C and A, and mineral contents [1]. Capsicum annuum has many varieties, whose fruits differ in size, shape, colour, and pungency being this last characteristic due to the presence, in different degrees, of capsaicinoids, alkaloids which are exclusive of the genus Capsicum [2]. The present study focuses in the transcriptomic profiling of an autochthonous Spanish variety called “Padrón” (mild hot) [3]. Pepper “Padrón” plants were grown in farms under the local conditions and fruits at both green and red ripe stages were collected. The transcriptome profiling was carried out in both types of fruits by RNA sequencing (RNA-seq) in the NextSeq550 system (Illumina®) [4]. RNA-seq analysis revealed that the expression of more than half of the 17,499 identified transcripts was modulated during ripening. Thus, comparing to green fruits, 5,626 and 5,241 genes were up- and down-regulated, respectively, in red fruits. These differentially expressed genes (DEGs) have been analyzed to determine the functional categories which orchestrate the ripening process at the genetic level of this non-climacteric fruit.

[1] Corpas et al. 2018 J Exp Bot. 69, 3449-3463.

[2] Palma, et al., 2019 J. Exp. Bot. 2019, 70, 4405–4417.

[3] Palma et al., 2020, Antioxidants 9, 878.

[4] González-Gordo et al. 2019 J Exp Bot. 70, 4557-4570

[Supported by grants PID2019-103924GB-I00 and P18-FR-1359 from MICINN and PAIDI-Junta de Andalucía, Spain]

Keywords: Pepper fruits; ripening; RNAseq; transcriptome,
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