This submission belongs to the session g. Computational Chemistry of the event The 11th International Electronic Conference on Synthetic Organic Chemistry
Published date
30 Nov, 2007
Citation
Daimel Castillo-González, Miguel Ángel Cabrera-Pérez, Maykel Pérez González, Alexander Durán-Martínez, Liane Saíz-Urra, Marta Teijeira, Telomerase inhibitory activity by stabilization of G-quartet: A QSAR approach using 2D autocorrelation descriptors, in Proceedings of The 11th International Electronic Conference on Synthetic Organic Chemistry, 1 November–30 November 2007, MDPI: Basel, Switzerland, doi: 10.3390/ecsoc-11-01360
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Telomerase inhibitory activity by stabilization of G-quartet: A QSAR approach using 2D autocorrelation descriptors
Daimel Castillo-González 1,2
Miguel Ángel Cabrera-Pérez 2
Maykel Pérez González 2
Alexander Durán-Martínez 1
Liane Saíz-Urra 2
Marta Teijeira 3
1. Department of Chemistry. Central University of Las Villas. Santa Clara 54830, Villa Clara, Cuba
2. Molecular Simulation & Drug Design Group, Centre of Chemical Bioactive, Central University of Las Villas, Santa Clara 54830, Villa Clara, Cuba
3. Department of Organic Chemistry, Vigo University, C.P. 36200 Vigo, Spain
Abstract
A QSAR approach on a dataset of 546 inhibitors of telomerase activity, by interaction with G-quadruplex DNA, was carried out using 2D autocorrelation descriptors. A linear discriminant analysis (LDA) was made on a training set of 437 compounds and it was assessed with 109 compounds belongs to the test set. The model good classified the 80.09% of the dataset and the percentage of good prediction was 78.89%. Only 5 compounds were not classified. The 2D autocorrelation descriptors are able to explain the factors that stabilize the G-quadruplex structure and consequently the inhibition of telomerase by this biological mechanism.
Keywords
Telomerase inhibitors
G-quadruplex
molecular descriptors
QSAR
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QSAR modeling for predicting carcinogenic potency of nitroso-compounds using 0D-2D molecular descriptors